NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114973_10037132

Scaffold Ga0114973_10037132


Overview

Basic Information
Taxon OID3300009068 Open in IMG/M
Scaffold IDGa0114973_10037132 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2920
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Candidatus Nitrotoga → unclassified Candidatus Nitrotoga → Candidatus Nitrotoga sp. CP45(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009266Metagenome / Metatranscriptome320Y
F101144Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0114973_100371324F101144N/AMEAKTFTYYMTERHGYVETTRAYLRKLKISKLISPYSKQSRSKVYLEEDGDLRLFIKRHSVAGIEITLKEAEKEQRFFDNMLNFKDEYCEDKQYDGFKSDWTMLQRTYFTKPDSIKHVVNSTFETSDGKCLKIVPAFYLDGKPLNEAQLNKLGIELTKVRTDECEVSYDD*
Ga0114973_100371325F009266N/AKEIKILDKEIQYLCEQQDRVKAIREYTGINPGYNFLQEAETIESLYKSVLEHRKHDKSTYFSCATSGWNIVYLRDKKTYKKDEEFRIKIFHTFVWSDNLD*
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