Scaffold Ga0114973_10041251

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114973_10041251

Scaffold Ga0114973_10041251

Overview

Basic Information
Taxon OID	3300009068 Open in IMG/M
Scaffold ID	Ga0114973_10041251 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2753
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)		Depth (m)	7
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009066	Metagenome	323	Y
F026867	Metagenome	196	Y
F043823	Metagenome	155	N
F048834	Metagenome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_100412512	F009066	GGAG	VTPEHEKHLAGIIRDLTNDVDAKYRKGQEEHGGALWRRPVWKDAWMEVLDLCTYVHTLKMQLSVIAELALMGAADESVVAAQSRESCRQILAVLQGFPSAQDKK*
Ga0114973_100412514	F048834	AGGAGG	VAIPTVKDWAVALDAYVAGDREEVVPPGWYTKIEISKQWGKSDVYTNKVLTRMIKAGGAERKVFSIKIKICNRGSKIGHCRRVPHYRLTPAKSRKS*
Ga0114973_100412515	F043823	N/A	MTLMKKVKTNLTIDPKVKRNGERMARKSGLSLSAYITTLLVKELEKEKRR*
Ga0114973_100412517	F026867	GAG	MGLGRLNDIAMKLRQQDQALSLRQLGAAYGLGYVRIKQMQELSGFPLIAGKIIPSDFDQWRMMQTGLSSLHRASRPHSAVGKARALTSRSDSRVAWRQIENSLKAAVSSLGLPEANENNDV*

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