NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114973_10041301

Scaffold Ga0114973_10041301


Overview

Basic Information
Taxon OID3300009068 Open in IMG/M
Scaffold IDGa0114973_10041301 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2751
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000354Metagenome / Metatranscriptome1244Y
F029334Metagenome188Y
F047018Metagenome / Metatranscriptome150Y
F071147Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0114973_100413013F071147AGGAMTTNQAAFVFFAGLLLTFGAVGGIESSINDEQMMGSLLLAILGLLAMYAGTLGFRNANYFDGR*
Ga0114973_100413014F029334AGGAGMKELDTKDAGSYAYAAARDAQRRNSNNKSHYTQDQIRKALSVRDLLDSAFTYKNLYINYRQKFIAIKAEGARARDSMAKEVINLFESNGYLVASTPQGVIVRIVK*
Ga0114973_100413016F047018AGGAGMLKLIGFCFVIYLGWITGLIQTVLLVVAGVLTMIAGA*
Ga0114973_100413017F000354N/ADHFDSEKQSNWKKIGKFIVADGQEYAHIMETEFDFEDVGSGEYEAFQAGVKYALTKMNIAFEAAAVDLQVCEVDLVESMGYMLVRADDEPEDFVKRVMKKPVMMVDSWV*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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