NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114973_10109071

Scaffold Ga0114973_10109071


Overview

Basic Information
Taxon OID3300009068 Open in IMG/M
Scaffold IDGa0114973_10109071 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1567
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003290Metagenome / Metatranscriptome495Y
F056614Metagenome137N

Sequences

Protein IDFamilyRBSSequence
Ga0114973_101090711F003290AGGAGMTNPTSNFGWQMPTPTDLVTDLPADFEVFGQAVDTSLADLKGGTTGQILAKASATDMDFT
Ga0114973_101090712F056614N/AMTVFNPVWRVKIQGVEYTTYTLANLTITSGRNNIYQQAQAGYCNLELLNLTQAIVNININDSVSIELQDSTATYVPIFGGTVVDFGIEIITAGAVGINQVLKITALGALSRLPKALTDGTLVQDQDGDQIWHILQNLLLNNWGEVPAALTWSAYDPTETWANAQNVGLGEIDRPGNYTLAQRSADRVDIYSLVSALATSGLGYIYEDASGLISYADSTHRSIYLATNGYTDLTANHALFNGLKIETRAGDVRNDITLKYNTNSNNEVSAEDINSIDIYGRLAQVITTTVKHTADAQDQADFYLTLRATPQANFTSITYQLTNPELDDQDRDSLINVFMGLPLRISDLPPNMAAGTFLGFVEGWSFKAAYNEIAVTLNLSPLSYSLQAMSWEQVPIAESWNTITGALTWETALVVA*
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Institute for Fundamental Biomedical Research
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