Basic Information | |
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Taxon OID | 3300009068 Open in IMG/M |
Scaffold ID | Ga0114973_10403092 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 716 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 7 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F009268 | Metagenome / Metatranscriptome | 320 | Y |
F027512 | Metagenome | 194 | Y |
F091345 | Metagenome | 107 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114973_104030921 | F091345 | GAG | MKTMQQQETEAILSMVELIKTLEQQLSNAKARIKELEDKQKQSDFAELKSHYE* |
Ga0114973_104030922 | F009268 | GAG | MSKQWQEKEFSQWVYYDDGDGKIIGAVYKIGNATGIWGAKVYTEIEGVLGQYIDSDYAKKSVELYWEIDSRTLIE* |
Ga0114973_104030923 | F027512 | AGTAGG | MTVEEQMKEFLEMYGDRLPNPEHCPKEFEYYVRLYKYIKGL* |
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