NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115566_10007306

Scaffold Ga0115566_10007306


Overview

Basic Information
Taxon OID3300009071 Open in IMG/M
Scaffold IDGa0115566_10007306 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120405
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8564
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000413Metagenome / Metatranscriptome1169Y
F000983Metagenome / Metatranscriptome814Y

Sequences

Protein IDFamilyRBSSequence
Ga0115566_1000730613F000413N/AVKKFYSIKLKQFKENIPPALAETMLLDESKLVKYLWKHKALEFRYPKHKDRLDLYADEKYLMMGKLKYPTMFGNQKRMGFMELYIVHRINQRMMNAKGST*
Ga0115566_100073067F000983N/AMKSYHILECSNQQKIADSLYGYYVGITANRELKEFWNHLSRKEIQDYFSIPNNPCKEWFDSLGLKVRDMSFTIYNEDIGTDIHRDEPPVIAKINFPVLNTKDTYNVWFDDYAKEIDRVECDKSIVLRSDILHTVEIGKNAKYPRIQFSFCFYDEPLQLLK*
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