Scaffold Ga0115030_1000224

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0115030_1000224

Scaffold Ga0115030_1000224

Overview

Basic Information
Taxon OID	3300009072 Open in IMG/M
Scaffold ID	Ga0115030_1000224 Open in IMG/M
Source Dataset Name	Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Male1 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	21876
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (58.06%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location Name	Sidmouth, United Kingdom
Coordinates	Lat. (^o)	50.677	Long. (^o)	-3.24	Alt. (m)		Depth (m)	2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F066406	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115030_100022413	F066406	GAGG	VSVASRPSTRASKLSVTQLVFVARGVFPEWTPCVCALRGLLPGRVFPDRTTRRHGLARLPPYWVGLAGRVVTFGEAAGEEGDSIFLGVVAVRQPASGGT*

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