NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115030_1001715

Scaffold Ga0115030_1001715


Overview

Basic Information
Taxon OID3300009072 Open in IMG/M
Scaffold IDGa0115030_1001715 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Male1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9894
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (46.15%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameSidmouth, United Kingdom
CoordinatesLat. (o)50.677Long. (o)-3.24Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013163Metagenome273Y
F038959Metagenome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0115030_100171512F013163GGAGLSTYVAGKYRAAEDVMVLANRGSPGGSSRKGQMSTGPRGLSIIHLSSQWEGDDIDTHEVVAVLLSDTPGFRTVGAAPYPRREAPTGPRLCYMCLKRGHLVPDCNILTDKQRDIVKASRSTFLRQRNGGAVASPDRTAVVALHWNDLLGGVESTNTEAGDVPPVVTRGFHE*
Ga0115030_10017155F038959N/AVERYNRTIVGQLRTYVEDYHDSWDDLVSMLTLAYNTRPQQSTGVAPLEFVTPERVRSLSVERMVGSPTPEETKGSHWAIREVIRARLRNLIHKVRRSLMLAQRRYNKNYDFRVRPVNTYVQAGDWVFVDGHARTKYKLGTRAAGHFKVLTRGEGTFSLDIGGYPETVSSDYVTAVPGPPGDPLTLLKTFGVPQDVVVPEGHQHTGKDFVWEAIVGHEVAADGTLRLWTR*
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