NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115030_1006538

Scaffold Ga0115030_1006538


Overview

Basic Information
Taxon OID3300009072 Open in IMG/M
Scaffold IDGa0115030_1006538 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Male1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4595
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameSidmouth, United Kingdom
CoordinatesLat. (o)50.677Long. (o)-3.24Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053751Metagenome140Y
F061493Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0115030_10065384F061493N/AVDPTRGTDVMPVRIQSLPKGIRVRDAPLPKGLDGRNVVAIVTGSNHHVASRIWLDAGRELALRVIVDTGSGVSLVPEALMPPEMKVAPLDTATAQLSDVNGGLLPIAGTVTLTVRVGTYSTQVTCGVVRGMSVPLLLGTDYTDVHVPNICAPKGYIQVLDGYKVPILRRGQSEPTQQDGCRS*
Ga0115030_10065386F053751N/AVVPPKIVVNHPYYRIMFDCETYALDNKSVVYMRRQARTLGRRKKDVAQSFGVHDEWDGSPPAKVFQFLRKFSEACDDNDISEGEAFYIPQDFTKEPLESGVMTVLPTRRAGNPGEVTFYVELINWMLRRHVDETSVATLVETLNVAVQRDDEDELSFAKRPRRLNIECRFMYREGALKGRFVKGVHRAARATVRERNTPGMTMAS*
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