NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0114957_1005435

Scaffold Ga0114957_1005435


Overview

Basic Information
Taxon OID3300009073 Open in IMG/M
Scaffold IDGa0114957_1005435 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Bantry Bay, Ireland - BantryBay_4 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10583
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameBantry Bay, Ireland
CoordinatesLat. (o)51.64Long. (o)-9.71Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027093Metagenome195Y
F031346Metagenome182Y
F100271Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0114957_100543514F031346N/AMDSTWIPTIQHVHVTGDGFIHADASWIDSTTAAASKEVIPVAWLEFSLPSMTRLFALDPQLALRHFPRLNRVYGPYTYSWPKSAPATLIGSDPSVPVLPNGLLPPPVQHLDSVLRRLVTTTEAGTVAIPQWTNNSWYATAIRACFEYEALLSTDARDTNPTPWAMWACHFLHRYDDK*
Ga0114957_10054352F027093N/AVDPTRGVDEVPVRIQSRPKGIRPRYAPLPKGVGGLNVVAVLTGSTCQVACRVWLDAGRELALRFIVETGSCVSLVREALLPPEMKVALLDAATAQLFDVTWGLLPITETVNLTMRVGICSAPVTSGVVRGMSVPLLLGTDYTDVHVPNICGPEGIIQIRKRCMVPILRRGKTVSYARAGQRSKSGAAGEADIKVRLAH*
Ga0114957_10054358F100271N/AMAVARGLAIVKFDEPFLVKLCRFRKDQVIVRKNATSGFAEPYQGPMLSAVLDNNNAKDETDTSSDDASRRGPLEDLDFSKAPEYLHKQIRDMLKTHSSM*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.