NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114957_1006397

Scaffold Ga0114957_1006397


Overview

Basic Information
Taxon OID3300009073 Open in IMG/M
Scaffold IDGa0114957_1006397 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Bantry Bay, Ireland - BantryBay_4 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9439
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameBantry Bay, Ireland
CoordinatesLat. (o)51.64Long. (o)-9.71Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006930Metagenome361Y
F019271Metagenome230Y
F024709Metagenome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0114957_100639712F006930GGAVTLMVPHMVHLQDVVKLHTFVLGDLGALLLACFGFDLRFALVAFDLVRDSIWCEGVGVGV
Ga0114957_10063973F019271N/AMRWIDYGLKDDTWEPLENHPRNLVVRFFRKRQKFVPGYEWQTPTQRSRRQAGLTTVANIVMDPMWLPTIQHIHVTGDGIIHADVSSTDSTTPAAIKEVLPVAWLKSTLLSMTRSYSYDPQLFFRHLPRLNRVYGPYTYAWPKSAQATLLGSDPSVPTLPKGFLVRPAQHLDSVFRRLVTITEEATAVIPQWTNTSWYASAIRACFEYEVLLSTDAKDSNRTPWAMLACHFLHRYDDKLKN
Ga0114957_10063974F024709N/ALFESAPVRDVRIRAPRGADRSAVAHAWVDQVTGLRRAVKRADSEGVESALAIIGQAVVCAVDGDASYKRFAQNLEAIQPEQVAAPTRFNAQSVLRRRAYDNGGPSGGALPSARNARARSVSQ*
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