NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114957_1009274

Scaffold Ga0114957_1009274


Overview

Basic Information
Taxon OID3300009073 Open in IMG/M
Scaffold IDGa0114957_1009274 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Bantry Bay, Ireland - BantryBay_4 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7223
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (46.15%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Rhodophyta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameBantry Bay, Ireland
CoordinatesLat. (o)51.64Long. (o)-9.71Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036534Metagenome169Y
F041566Metagenome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0114957_100927413F036534GGTGGMGGIKIEKLTKTNFREWRQRIKMILALRDLDDILDEDGKPTDAEDRELAVWKRPDTKASAIIGLTLGSEQLEHVSGC
Ga0114957_10092743F041566GAGGVEPPYAAHHKWYRVGSIAPDGDALRADLSAAAVNRLAAAGGAPAGAVGLGISRVLRNGVDRLHASLRTSSIPTMEEAMNGVVQFVKERHRASHMEDDVGRVLKEVRAADRVASADDRFVYDDSDGSGGSLPSGPRRQHR*
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Institute for Fundamental Biomedical Research
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