NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114957_1045982

Scaffold Ga0114957_1045982


Overview

Basic Information
Taxon OID3300009073 Open in IMG/M
Scaffold IDGa0114957_1045982 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Bantry Bay, Ireland - BantryBay_4 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1999
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameBantry Bay, Ireland
CoordinatesLat. (o)51.64Long. (o)-9.71Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013269Metagenome272Y
F024709Metagenome204Y
F104363Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0114957_10459822F013269AGGAGMVTADAFPLPANVNDKRGGVRVCINVHEGSDGFALQLVFPIVVGRLYVVADLDVRIATCDPMVEVTFVTLLRLTQGLDYDGDLLAQAGHELAFAS*
Ga0114957_10459823F104363GAGMDNSVTGNMDMLDRGYPRGVHDDVFHGCEPGLSATSSRWRLPFVPWYMLLLLSKKAHHQVAWEILQGFPGVVFQPVVEPAHLSAIAVTRLA*
Ga0114957_10459824F024709N/ARTAVERADGRGVESALSIIGQAVARAVDGDANYGRFAQHLEAIQPEEKPTPARFNAQSNLGRRTHEGGGPSTGAPHSARNTRARSVSQESAASVGASRDSRLDSRRREEEE*
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