NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0115549_1048681

Scaffold Ga0115549_1048681


Overview

Basic Information
Taxon OID3300009074 Open in IMG/M
Scaffold IDGa0115549_1048681 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100430
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1519
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005129Metagenome / Metatranscriptome411Y
F051139Metagenome / Metatranscriptome144Y
F072257Metagenome / Metatranscriptome121Y
F092077Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0115549_10486811F051139N/AMQTAKLKLPVKQFHQLHDLLGDILDHEAETNDFNMENSDIELMEDIRHELFNQIPDEEPIETTYAFTAVSGATNITPIKLYETKPCDDGGGFLITNDAGREIYCLEKGCSHLSRLGSKNWNLITITND*
Ga0115549_10486812F072257N/AMQELDRVVHQWCDDNDRWMYIEYDRDGKVMGLNFMQGDEYECFKESWCVSDRGLTDFYKQMLYTFAYEQKNVPEHCFINSCMWAYHSAISSRDEYAKPTPCHRQCTIYKTNTTADR*
Ga0115549_10486813F092077N/AMNKDLSPLQRSFKRINELLPDSDQVLLRCDLYTMCTELTNKSFAEGINTKY*
Ga0115549_10486814F005129N/AMKYKVKIAEVNKSTNLMHHSYIDLGIFTVNATTHSFLYSAVKTDWGADINDTELEFYVNNKRCKYVGFKELYTQLYGNSFVTWEADIIRQIEEEVAKRIVKEYPGTDVNY*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.