NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115549_1120229

Scaffold Ga0115549_1120229


Overview

Basic Information
Taxon OID3300009074 Open in IMG/M
Scaffold IDGa0115549_1120229 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100430
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)868
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001839Metagenome628Y
F011253Metagenome293Y
F060420Metagenome133N

Sequences

Protein IDFamilyRBSSequence
Ga0115549_11202291F060420AGGAMIPTKLTIDQLDNYFQTATYVERYMPSPLNMKNRRTEMFSLIDRLYGIGKDKDSYKGEDKPKMKIRLNGEQ
Ga0115549_11202292F011253AGGMNNRKSEIDKIIKDMVKNKSLPYANAITKIKKDRIGYFQAKDIKQKQKSLSTDRFQQYLKDIAENDTD*
Ga0115549_11202293F001839N/AEKLIYIICKSFENAPRGCRISHKYLMQRTGIKTQPTLIRCLDRLTLFGMLARKQIENGTCHYVFDKPTMQEYIQHNLNKRRRISLSKNRHNRNLNTALSSPNVINIGKVIK*
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