Scaffold Ga0105090

Basic Information
Taxon OID	3300009075 Open in IMG/M
Scaffold ID	Ga0105090_10000376 Open in IMG/M
Source Dataset Name	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm March2015
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm March2015

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	21534
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (27.27%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

21534

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (27.27%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location
Location Name	near Jamestown, North Dakota
Coordinates	Lat. (^o)	47.0956	Long. (^o)	-99.1001	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

near Jamestown, North Dakota

Coordinates

Lat. (^o)

47.0956

Long. (^o)

-99.1001

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F005050	Metagenome / Metatranscriptome	413	Y
F008936	Metagenome	325	Y
F024730	Metagenome / Metatranscriptome	204	Y
F030677	Metagenome	184	Y
F061575	Metagenome	131	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0105090_100003761	F061575	N/A	MSVCSPCFDSGISVAACNAGIAFGVVPAESNYVVRITHNATKKVQQFNVASDVDGIITIIGAKIDAMQGYTIALQGCEKFTICEVEYDCISFSVVNMDVDEPETINLLECVSC*
Ga0105090_1000037613	F008936	AGGAG	MASFDSLVRDKIALFESVPEKLATAAQKTQAEIWRKIRPILEDMDVTAAGNIEQTEGNIRRIALISDELKKVLAGGEYREAVRAFLGSIDEGVQLTNEIARTFESAFEPTEVQKQLLQISKQNAINTFFGAGLDARFTQPFLEQLTTNIAARSPLRETVAALEGIVTGTEANDGRLLANIKTTATTAQAVADRSYSAAVNDELGIEWFEYLGGEIPTTRPFCEHREGEIFHRKEIEAWGDGKNSGGIRDIRDGTWAGRIDGTDSKSIFTLVGGWNCRHYLVPVPDRKVPETVKARARAEGFI*
Ga0105090_1000037619	F024730	N/A	MCIESLLGLRGCESPEPSTGLYIDDLGINQTFLGQLITDQYNNGVELFEDKRAFAWRKISSDVLTKLSPMMKSDTVIENKRVGQVVSNYSNVQTALGAGNYGGIRLKIDPNTVSYLNFYLADINLAIASSNVNVPVLIFDMTTGKLIQSLTYAEGALDQFIGKTLTSAKRKLDIAIVYESTMNTVKFTPKRGTCTSCGGGPRESHICPFVDAIGIELTTDGTNVLTSSSSRYTTGMSLTYSINCDRQGWMCSIGGLMALPLAYATAVEIYNYALTVSPNQRVNTTVIVNRGQNKAELMDGIMAARDIAATRYGEELGAMLQNMRLPDDTHCWDCKRNMKYVTALP*
Ga0105090_1000037620	F030677	N/A	MPTPAEIQKNLDILYEGWTSKFTPLYVAVRELKRIMFKRIFGTGSSGGTNTAGEKLPTKPYSTKPIYVSPRALASAPSKYKVGKRGEPIESLYFQGGYAELKKGTSRKLPLELTGKLKGGFLSEEVITEGLEAAIALPGSETGKVDGLEAKYGIIFLPTKEEQEAMLEEHAQLLVEQIINAMNKS*
Ga0105090_100003768	F005050	N/A	MACVSYCDSSLLDHNLVNCNEYKLGGVSAIIVGACGTELVNPEDEAALEALLLNGTAKLIEDIRFALPAGSPVTVDSPIGCGTPIRINEDRTATLFDANVTDENNTFWNDVNNRRIAWILAYMCDSGKVIYIDPPQGLTTSANFILPEQNNELQRYEVTFSWRDKNIPTQYEAPAGIFG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0105090_10000376

Overview

Ecosystem & Geography

Associated Families

Sequences