NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115550_1010949

Scaffold Ga0115550_1010949


Overview

Basic Information
Taxon OID3300009076 Open in IMG/M
Scaffold IDGa0115550_1010949 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100511
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4829
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (7.69%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038239Metagenome / Metatranscriptome166Y
F049629Metagenome / Metatranscriptome146N
F073555Metagenome / Metatranscriptome120Y
F101162Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0115550_101094912F049629N/AMKDLIDFKNQQIEALQDSNAQKEARIAILETWIFELTDDKCPRDYKKVIRTELLKTN*
Ga0115550_10109493F101162N/AMIKRIIDNIASDKKDHVLLGMFIGYPLMILGFVIDQILNVDFMLVFGAIAGIILVGLKELIHDWYLGKGNPELADFLYSALPILFSLIIYTI*
Ga0115550_10109496F073555N/AMDVLNFLIHLVMLFSGAYVPLDAVKYPKLLMLINRVAFIGLLIYLTI*
Ga0115550_10109499F038239N/AMGNGYVKRKNFSDFIPRYTDEYTKEMDEEGLNILKWSMFDSPDLLGSGKRFMESEPVWILDEVFRTERLKGYIHLGYTSKTYADRIGLGLESEHRIGKAIKFKCINPSHRLRFVRSLMQYGIERITIYDNSIYFDTENMKGSFLNFRHF*
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