Scaffold Ga0105098

Basic Information
Taxon OID	3300009081 Open in IMG/M
Scaffold ID	Ga0105098_10002251 Open in IMG/M
Source Dataset Name	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6938
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (44.44%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

6938

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (44.44%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location
Location Name	near Jamestown, North Dakota
Coordinates	Lat. (^o)	47.0956	Long. (^o)	-99.1001	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

near Jamestown, North Dakota

Coordinates

Lat. (^o)

47.0956

Long. (^o)

-99.1001

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F006264	Metagenome / Metatranscriptome	377	Y
F012670	Metagenome / Metatranscriptome	278	Y
F040590	Metagenome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105098_100022513	F006264	N/A	MEDHSTTFRLKLSAQAETCARKTLEWLQKDLQGDRELAPQDVYYLASAADLLLTMRDLYGKK*
Ga0105098_100022514	F001059	AGG	MATYDIEALKADLPTAKDLAQFVYDKTGISLDLIGKPKEDQYLVARNALEGKKIPADFQTDLNPYIDRKELIPVDEKKQIPPRPADLPDTGSQVHFFGATNMPHPTDPQSDRKVQINFRKYDNGVITFQVTGPVEQIAVGERINKFGQKQPEKYSWLDPRTEEIMLRRPDGTFTEKGRGLYAFCVGEKGGGIWSLIDRNLMNIAEKNVTNPWA*
Ga0105098_100022515	F040590	N/A	MSYGKVISGGKAMTNGLTKGINNKLKGFEEGHKRGQTLATAVGKAFNQNPLSDNHLNNINVAAAKKFTTPKLPTNV*
Ga0105098_100022517	F012670	AGG	MKKPKDADILFGEIRPEGSLVTSPEELERKKHFMKMKRLEKRAMGLATGEKFPKEEPKPVGRQKSIVNRVTEYGALFNKLNEERLAKGLPPLKTAMEVLIDAMQSDEIDIKDKARIADKLAPFESSRAPIISIEHVNNVNKEEEVSADDALDDFLTALRKV*
Ga0105098_100022518	F001915	N/A	MEWTLAHPLHDVDDIVELADSMFGREADGILTRDRNVFRKNVTITSTVQLFDKGKEFLAVCRSVDKSVDNLLAYCWFDRGGYTTYANEEISNAKFHHVDLSLPAKQRVKLIHQMIDQHILWASTWGIPVICSTSIRQEHDGFMRIHKKRGFTVNGSYAWARTADVLKGLT*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0105098_10002251

Overview

Ecosystem & Geography

Associated Families

Sequences