NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102812_10045737

Scaffold Ga0102812_10045737


Overview

Basic Information
Taxon OID3300009086 Open in IMG/M
Scaffold IDGa0102812_10045737 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2449
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2Long. (o)-123.94Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F086833Metagenome110N
F100702Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0102812_100457373F086833N/AMNKLAELLGLRAQIAELENEINNESITFTREELIEFTKTISNAVANGVKFELSKKDNFDFGSALYTKRNSDLMGGLEVKVSRGRVLSEVVDSIDWVLDDENVESVVENVLESLGK*
Ga0102812_100457376F100702N/AMEDIFKEIKTKVASLMMEQKRLWESTYKDRVATELERQTYLEHANRIDEEIKKTIPESERLTICLTGCAKGDLSHYEIEESLQTKFKAGEGIQYDSEGGQFWVYINPSLVQPVLRHIDYHFPDQIRLHVSVNKYAENPWFQNWTRAEKYLAKKEG*
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