NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099830_10150699

Scaffold Ga0099830_10150699


Overview

Basic Information
Taxon OID3300009088 Open in IMG/M
Scaffold IDGa0099830_10150699 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1788
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California, Eel River Critical Zone Observatory
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035232Metagenome172Y
F058741Metagenome / Metatranscriptome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0099830_101506991F058741GGAGMDRYHTVETWSSAPGTIAPADGNAGNAVAAVFRPRGLADDTAGGSDRKSPPSKERGYNKGDGEPAAADLGPNNERLEDAKPELVHALHELVRQYRQEGIVARRHEIRRIRQARLFWQGLQYAWWNPNDMNWHLPFEQRFSDDRELEEMPRYQFVTNFYQ
Ga0099830_101506995F035232N/AVRDDRRQEDIRKVEGDDPADAARYGLVSGGRLAGVGPAFVPSRAGQAPPLYPPRGGPHFVTGMPLDEQIARQVSAQDPTSRAIHYQRLESEAKKFFRPKPLPRRR*
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