Scaffold Ga0099830_10332195

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0099830_10332195

Scaffold Ga0099830_10332195

Overview

Basic Information
Taxon OID	3300009088 Open in IMG/M
Scaffold ID	Ga0099830_10332195 Open in IMG/M
Source Dataset Name	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1219
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California, Eel River Critical Zone Observatory
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003470	Metagenome / Metatranscriptome	485	Y
F043697	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099830_103321951	F043697	N/A	MDELIAIQAAAAMEAELVSPAHLVVDTFPCEQGSQRVTDATTLYKAQKKP*
Ga0099830_103321953	F003470	AGCAGG	MCLENTTTLSETQRERLREDLTTAMRHHEHIRQQSTHLTQGKKLRHCKVVNAYDPTIAPILKGKSNCPAQFGRKPGIISEPATGFIFANLTPQGNPSDASYVLPLIDKVGQATARVHHGPKRSIHSLAGDLGVNDPVVRQALHERHILSVGIPKTVEPIKPDPSAEEIRDILNEANLQRKRTPYQVQLACASGSSRPVVESHIATLLSRGAGTVRYKGLEGAVVQQGMTVMSSHGAVLVRIRQRKMTKRAQKFRRLLGLKYPKVSKIN*

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