Scaffold Ga0099828

Basic Information
Taxon OID	3300009089 Open in IMG/M
Scaffold ID	Ga0099828_10000204 Open in IMG/M
Source Dataset Name	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	34678
Total Scaffold Genes	38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (55.26%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

34678

Total Scaffold Genes

38 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (55.26%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California, Eel River Critical Zone Observatory
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California, Eel River Critical Zone Observatory

Coordinates

Lat. (^o)

39.7291

Long. (^o)

-123.6419

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F009739	Metagenome	313	Y
F016136	Metagenome / Metatranscriptome	249	Y
F021081	Metagenome	220	Y
F026530	Metagenome	197	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0099828_1000020415	F016136	N/A	MTMLLGTFALAISILAVPAVAGSAPTGSVDSSNRVIFNSGSLTGVFEGNVPHITFYATNEVGRTTYQLNFRALLEFNMSTSSGENTYESPLMVARASFDSATWTPSNFYAIKDPSTGATIGMAFNFTLKSPMQIVEQTPPAQSLKPGDVVLVVKAYNDTKTMTVNGQSVKINTAEIKIDFVLKNWPFASSNDKLALQVNMHSDYNHFDLDQSTGTATVDATNDEGAGVMEHPYQESSSVEQDVRYASGPVTSSVNVGFFHFVNTATVTSASGTAQSVPVVASYKAEKEGSETFLKLYLVYPYFASGSTLVHDPSFGLQGGLPTLYIIAGGAGVAGLAAVLVIRHRHIQVQRFPKSN*
Ga0099828_100002042	F009739	GGAGG	LTLVDLLISLGSAGLAFFSLPTVLNKASQVPRRTASIPTAATLTYFIPLFAISGLVLTSITIAGQAIVWWLIVAFRPVKKTK*
Ga0099828_1000020430	F021081	AGG	MGTASQPHGHKKYVLAIIVVALIGLVVGGLVTSTFLIGPDVTDVTGTVTLQNPYLNQYHGIPNRILFTSTVTGNLSAGIFSDKSYQAYLPILSSGNYAVSIQWTNVTAGAVSFYGCTANPSTFSSSNQSATQNFSC*
Ga0099828_1000020432	F026530	GGA	MRSTFGISWLISAYLVLALGLIGIVGLLSTSYLVSSMISQRMRDIGVIKAAGALPGRLLSYVTFEAFLVIFSSCLVGGLSALLIFASWSWPSVSLFKQVGPVPNAGATVLIVVPMISFLLSYVVASFRVRRIVGSSSVNAISKQLYNLDLKSLGKPLRIKSLGSAFNLATRNVSRDRGFNKTLLSIGICIFLSMIVLSGALVSAHTSASYVIRAMPPDVLIVATSRIHNQYVSLGTSFSSTAPVPSMDYLNQSNIIIPQLVAAFRAIPGVGTVDTRLITVGLVTGYVKAHFASNQDTGENINTQIIPEVETGSAQALIVGVNATTAIGDWYTSNGFLQSSDQPYTIIAGDSLVGNIVQMPFNLSQVSAFGFRYDVKSALVDPLNAGRVLYAPVQTLQRNLGVNGYNVLLLKVNSDPAVLSAVTRLASSYGLVVGSQDAILNSNLGFLNGTWSYIFLIPILTLALTCGILLSYLATNFSRRFNDYVVLKVLGASVWYRLRLLLWESWGVLAISMLIAIPVAWAVSIFFLVPDPSVSVADLELSTLVLASALTAVAVACAAIYSRRLGFTTVKDLKG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0099828_10000204

Overview

Ecosystem & Geography

Associated Families

Sequences