Basic Information | |
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Taxon OID | 3300009089 Open in IMG/M |
Scaffold ID | Ga0099828_10023775 Open in IMG/M |
Source Dataset Name | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4834 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (60.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California, Eel River Critical Zone Observatory | |||||||
Coordinates | Lat. (o) | 39.7291 | Long. (o) | -123.6419 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F033911 | Metagenome / Metatranscriptome | 176 | Y |
F057650 | Metagenome / Metatranscriptome | 136 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0099828_100237751 | F057650 | GGAG | MADERYVVMTVECPRCKTKQKVHVAARTESAQMGDQTIRCIRCNTHFKVTVPDRIIGGPFPA* |
Ga0099828_100237759 | F033911 | N/A | VLSTLGFAAVANAQADKPFPTDDEINLVLTQTERAIQQYKPLIDQEEIQMGKSAADAVAHDREVVKALELAVKAFKLKPQGFNGPLGFAFFEWLDDADRNAVLCGSGASTQATQQMMSGNTDKAALLLHLSQSCTDVSTLIYTVSENAGSLYQRYVEAEGQLAAEGAEVAQKCTDILKRSGITPKE* |
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