NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099827_10012889

Scaffold Ga0099827_10012889


Overview

Basic Information
Taxon OID3300009090 Open in IMG/M
Scaffold IDGa0099827_10012889 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5498
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California, Eel River Critical Zone Observatory
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013075Metagenome274Y
F026836Metagenome / Metatranscriptome196Y
F037660Metagenome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0099827_100128892F013075N/ALGELDVSNWKDLRVRTNASRIDPAIREIVSLLNDKGYKTFSSCSGGHRANLRRRYDRHESGYIAFSPPSRIPFDIYLALRSRNHNFMFEAEAVIHDGNRDRRETVYTQLDWQLVDESKHLLEYYEKLFLEMKRIIERLPRRRADHKEVLTGLLGKPHVTIGSKIVNGQMKRFAR*
Ga0099827_100128896F026836GGAMTQEPRSIRRLVLGIFSIALGIISLVAFFSITYIAGVGFLGGFYGFILIALGVGLILPKKEHKNEEIR*
Ga0099827_100128897F037660AGGAGLAEASAAKERTGPGATALVAGLIAGVVAGLIAYLFAGPVGFIVAFIIGAITGSRAALLVNRAREQSS*
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