Scaffold Ga0099827

Basic Information
Taxon OID	3300009090 Open in IMG/M
Scaffold ID	Ga0099827_10014343 Open in IMG/M
Source Dataset Name	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5267
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (55.56%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

5267

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (55.56%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California, Eel River Critical Zone Observatory
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California, Eel River Critical Zone Observatory

Coordinates

Lat. (^o)

39.7291

Long. (^o)

-123.6419

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012334	Metagenome	281	Y
F015579	Metagenome / Metatranscriptome	253	Y
F017278	Metagenome	241	N
F019106	Metagenome	231	N
F035244	Metagenome	172	N
F097102	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099827_100143432	F017278	N/A	MKPFKFEALSSDAPSLKPEMSEKKSMRDEVRREAKEALEAMRKDLQQLSKDLVVASKTLKTSTEKFVQDTGPKVSAGLEETMETFRRTMTTIDKQTKPQQAKLLRTYKRFLTKQVDFIEKRLKQTE*
Ga0099827_100143434	F012334	N/A	MSSKRPVELGREVRLFLLFLSEINLVMGALFFAYPNLVIGLWPWPLKALAVRFIGAIFLAIAFGCWSALRAKIWQRAKILVLVGGTFFGITSIVSIFLAASQGGGYVISTWIGYFLVASLGNFYLLYRYGWSRKPQDRLGGGQPSKTACWFFRIQTVVVGVFGVMMLLLPDIAQREFWPWLVATPTLQMFAGLFLATCLATGWASLQTDIGRIRVLLPLDIIFPSLALLAVGIHWDVISSQSPSALVTAVWVFIYAFVAVGSAYLYFSPRKKVVI*
Ga0099827_100143435	F019106	N/A	MASQVPLLTLARLLVLIGGIVLLVSGILEAANVGGLMDLGTNLARLGSLTGIVVGILVGILALVGSREVANPAWSLILLILGLFVGSLGGILVFIGGLIGLVSHYVKV*
Ga0099827_100143436	F097102	GAGG	LEIEVYNCGCKIRIYEVEFGESKSDLTERPSLISDYSPCSKHRYARKIPPREARLLKVRGEHEAFLNE*
Ga0099827_100143437	F015579	GGGGG	LGSDSKKPPRPRHRFSFSGQTKRPEGPAKPREANVTRNDILNSLTKYAHPQEGQVREAVEIQDPVQAPDFDQRAIPARTRNRGSARGALVVFLGGFLAVWLYGYATGAYEIPYLRGVTESPEVQVGAQLVSSSPILFGAVSVSVLLGALYLRHRKKN*
Ga0099827_100143438	F035244	AGG	MSNRDSVNFPRINLVSLLAGALALASLFLPWWGMDASSFGSSVSPRWTLWNGPSMDSIFRGSTQPYPTLTSASPIIGAFVVISALLSLAGSFTRNIRPLIGSFILSVLTPIAYLGVVSYAVTNSCNGQSNCLSGPFGTETVFGITLNWGFQIGFYLYVVAGTLTLVGLGFHRIFHKTIPTTQTSSPQPSTSTS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0099827_10014343

Overview

Ecosystem & Geography

Associated Families

Sequences