Basic Information | |
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Taxon OID | 3300009093 Open in IMG/M |
Scaffold ID | Ga0105240_10365520 Open in IMG/M |
Source Dataset Name | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1633 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Michigan, USA | |||||||
Coordinates | Lat. (o) | 42.3948 | Long. (o) | -85.3738 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000612 | Metagenome / Metatranscriptome | 985 | Y |
F051507 | Metagenome / Metatranscriptome | 144 | Y |
F053909 | Metagenome / Metatranscriptome | 140 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0105240_103655201 | F053909 | N/A | HNQSPAPNVELSNIFHFKGKLARCNGFHGMGTDNKGNRFAWGNPTTDYSYMAGEYWAGRQARQGIFTHT* |
Ga0105240_103655202 | F000612 | N/A | VPTEGLTFSQDGKTATLQMTNVPIIDQPRWPAMDAETTPAFMDFKLVFTATTEPVKYEDPSRQFRFEGFKANAQLEASFRVPSIDFTFKTDPLETSKCDFAVMGTEVNGKYYEAPKS* |
Ga0105240_103655204 | F051507 | N/A | PESAQIPTGLRVPVEINESRLLIKVGSDASPTGSWKLALDSGISQFLIFQDRIVAAERSCGKANCLMQVATNMAEHRASTILLQDVSIAGAHLPETQVVVLRNDLQKPSDRQDGLLPAAPFRSVFFDRTNATIIFSPVPGPFTMASFRQP* |
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