NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0111539_10000012

Scaffold Ga0111539_10000012


Overview

Basic Information
Taxon OID3300009094 Open in IMG/M
Scaffold IDGa0111539_10000012 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)332553
Total Scaffold Genes300 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)179 (59.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8444Long. (o)-83.9599Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007132Metagenome / Metatranscriptome357Y
F057405Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0111539_10000012133F057405N/AVTTTPPEEPQWYDLETPGDVLRRIKRTALVTAVVFAAFSAISGGFQAFLGLTCSAAVTMITFLWLEEIVNILLQPAAHLHARRLMLRTLARFALLGVALTVTIIIARFNPVSVLLGFSIIVVGICGEALYSLVREVARR*
Ga0111539_10000012273F007132N/AMNIRDEQKTRQVVRTTAGKVLRSDDLIGDEKDIAAGLLRANPGFGNPHVVRCNWCRETRTLFRDENDGPFQLTAHGWRCTPCDVSAASQEIKF*
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