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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009098 Open in IMG/M |
| Scaffold ID | Ga0105245_10000010 Open in IMG/M |
| Source Dataset Name | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 278233 |
| Total Scaffold Genes | 254 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 147 (57.87%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Michigan, USA | |||||||
| Coordinates | Lat. (o) | 42.3948 | Long. (o) | -85.3738 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001605 | Metagenome / Metatranscriptome | 664 | Y |
| F002324 | Metagenome | 571 | Y |
| F004159 | Metagenome / Metatranscriptome | 450 | Y |
| F071587 | Metagenome / Metatranscriptome | 122 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0105245_10000010184 | F002324 | GGAGG | MGEVRLFQVCFEGELTLAVSDAMRRLGAEPNFDQSWNVWLPEGGHAELLVRYLRIEVGDDARVLVGCSQFTNTRDFLLIRHSLTPGADYSELHDAIGRLGVVVDLPFESTFVIQSNDHTDVNTLGRALGELCPDDALFVTGISHDWAYCDGTTSRMYVTEQEPKSIQFRTF* |
| Ga0105245_10000010223 | F071587 | N/A | VLDLNAHGIKNTAALLGGWNGWVEAKLPTEKAETK* |
| Ga0105245_1000001038 | F004159 | N/A | MDYDFPIREKASQLGNALAESGPEALFEEIENLLPESWREHIRTFPIAAVVLGVGVGVWLGMRKGDEVIAAGTSMITAAAMQNVTNVMHAATGGGNE* |
| Ga0105245_1000001054 | F001605 | N/A | MPVTQTEPQTLAQVPFKVLDETLRQLRSTRNDIIRYGVWNTRNLTDDEFNHADDRKLLGYFRQDLLETRFLSKGRRIDLIQLWHWFDDQMTGTEPMLIGGEEHFVNVQDKDLDKVRKRISEIQSFLPTLRGDDLEAFKRVKYKLRRTVLRLTYDLHHLFKRLEKYRKNFGGPMAPRAERLPLEAAVDIPEPPPIDEHDEE* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |