Scaffold Ga0105245

Basic Information
Taxon OID	3300009098 Open in IMG/M
Scaffold ID	Ga0105245_10000797 Open in IMG/M
Source Dataset Name	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009098 Open in IMG/M

Scaffold ID

Ga0105245_10000797 Open in IMG/M

Source Dataset Name

Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	28589
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (62.50%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

28589

Total Scaffold Genes

32 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (62.50%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Ecosystem

Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	Michigan, USA
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Michigan, USA

Coordinates

Lat. (^o)

42.3948

Long. (^o)

-85.3738

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F030915	Metagenome / Metatranscriptome	184	N
F033237	Metagenome / Metatranscriptome	178	Y
F034654	Metagenome / Metatranscriptome	174	Y
F050293	Metagenome	145	Y
F068158	Metagenome / Metatranscriptome	125	Y
F075221	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105245_1000079717	F068158	AGGA	MKVTSDRIKARAQQLRNNGFKLSGSMVRSTLEMNAGARTLHPQKETSAVGEEEKAESAATKQKDTEAA*
Ga0105245_1000079718	F033237	AGGA	MPKTERSQNYRANGRSNVRVLHFPATTPMPAPSDGDADALADSIRKAWTQKSSNTRQASGSNPGQLRLVDGKI*
Ga0105245_100007973	F075221	N/A	MAANTPDICYVACFTEDDGVYSCGHHHPTVREAMNCLVPDGGSFIRAYDSGICRSLSNREFIDFLESLEQMPWSHRSKAQGNGLTVPTGNAAK*
Ga0105245_100007974	F050293	GGAG	MKPGWRKLCLPLLMAFSLAVMAQSKTPVADNNKVIEDARHAYYSLRTAGLDEFRATVKPNWELVLKDQLKADPVGAQAGLKLLNGIHFSMLLDEAGKVTVTHHADTEPSTEQQRKGFDDIYSGMDQTINGFFTTWSVFMLNSPFPSPNEEYKLEDLGTQYRLSYKDGTADVVTLMGKNLIITDIKVTSAEFNSSVRPQFVHTPKGFVLTGYDADYKPTSGSGVVKLALKIDHHPVNGLQLLDKLVLDSVMDGTPTHMELAFSDYAVKSH*
Ga0105245_100007976	F030915	GGAG	MPEGYYVPFSAVVDAPYWLYKFGQGPKANNSAGIIPKGGLIHVQGPAAAWGGTHQSAYLMGVGRIIVKIGDFQPAPAVTTNS*
Ga0105245_100007979	F034654	GGA	MNPRAILSGLLLIVAGFCVAAAARNSPKPVSGMHSNMPAGYAVMVLKPSKATLSLIGLIECPELEGAQRVAEGLHKKLVSADGTAVRQFPQRFSFRITASLRKIFVEGPDSSVDVAGDPQELLLNLKFRIRAYNGLQAREIVPQSVEMIGVPADVPYDERVYRINIDTGNLPITDRMIVEIFAPQGELLTHFPFSVL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0105245_10000797

Overview

Ecosystem & Geography

Associated Families

Sequences