NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105247_10446766

Scaffold Ga0105247_10446766


Overview

Basic Information
Taxon OID3300009101 Open in IMG/M
Scaffold IDGa0105247_10446766 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)931
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameMichigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004068Metagenome / Metatranscriptome454Y
F028398Metagenome / Metatranscriptome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0105247_104467661F004068AGGMRWIGCVCCENIRRDFVARTFALIAPVQPILHRVSCSNEMVPNAPKHYETHQTMSLGPDGVDRVDLLQKILTQLCGLSFCINFNSSARFEPSIVKQRNGPKCTQTLRNKTKHKFSVQWGGSG
Ga0105247_104467662F028398N/AHYETHQNMSLRSDGVDRADLLQKILTQLCGLNFYINYNSSARVELSIVKQQNRP*

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