Scaffold Ga0114948_10090924

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114948_10090924

Scaffold Ga0114948_10090924

Overview

Basic Information
Taxon OID	3300009102 Open in IMG/M
Scaffold ID	Ga0114948_10090924 Open in IMG/M
Source Dataset Name	Deep subsurface microbial communities from Mariana Trench to uncover new lineages of life (NeLLi) - CR04 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2012
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location Name	Mariana Trench
Coordinates	Lat. (^o)	12.4764	Long. (^o)	144.8648	Alt. (m)		Depth (m)	7939
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025751	Metagenome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114948_100909244	F025751	N/A	MDSETRKWERFFRILEQDDWEQTVYVYQVESSGKKITPFLAKWGMHAGLLDSLRDEFGSGEYHLMIRQGKTMLFTGTIGVECPLRR*

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