NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0117901_1008826

Scaffold Ga0117901_1008826


Overview

Basic Information
Taxon OID3300009103 Open in IMG/M
Scaffold IDGa0117901_1008826 Open in IMG/M
Source Dataset NameMarine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 250-2.7um
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)9296
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (36.36%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)143
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013819Metagenome / Metatranscriptome268Y

Sequences

Protein IDFamilyRBSSequence
Ga0117901_10088261F013819N/ARMSKYLKINVKNNIKEFTKGLNRFQRSQVPFVAARTLTDVAFKVRENAINKSFPQAFKNSTNASRMAKGRLRVMKAQKRDYERGMLSAKVLDKSSNPLEYLLTHQRGGMKTAKSGNFIAVPSDFIKKKLGVRRNPQWRPRAVRDMSGVRTVKRGKFVAGKAEQAIVKGKDRYYSLVKSVPIAKRLFFEENAERTVQKKIRYIWSTQLNRALRTSKYR*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.