Scaffold Ga0117902_1007761

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0117902_1007761

Scaffold Ga0117902_1007761

Overview

Basic Information
Taxon OID	3300009104 Open in IMG/M
Scaffold ID	Ga0117902_1007761 Open in IMG/M
Source Dataset Name	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Genomics Facility
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	16627
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (67.74%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location Name	Cariaco Basin, Venezuela
Coordinates	Lat. (^o)	10.5	Long. (^o)	-64.66	Alt. (m)		Depth (m)	143
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010167	Metagenome	307	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0117902_100776130	F010167	GGAGG	MIFGHASLIQEGEAALFYKFSRKLNGYMIAGLIVNDTIEAKLNFATVWTYFVSEVVRADDIYCSIPIEGEHSMFNNYLTYHSEIDGLKIYTVDSFLKKQYSNYDKQRERAGSDA*

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