Scaffold Ga0117941_1000344

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0117941_1000344

Scaffold Ga0117941_1000344

Overview

Basic Information
Taxon OID	3300009120 Open in IMG/M
Scaffold ID	Ga0117941_1000344 Open in IMG/M
Source Dataset Name	Lake sediment microbial communities from Tanners Lake, St. Paul, MN
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Minnesota - Twin Cities
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	23772
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Lake Sediment → Freshwater Sediment Microbial Communities

Source Dataset Sampling Location
Location Name	Tanners Lake, St. Paul, MN
Coordinates	Lat. (^o)	44.953471	Long. (^o)	-92.97875	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F075793	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0117941_10003444	F075793	GGCGG	MRSLAIVVIGGALAACGPSRAQRALAESEDFNCRDRLVSYVVSGHMGASELGVQMDCSEGPRIKRWKVDKEGNRVDDARALSPGEFDRVWREVDGTGWPNLRDCANGTGGKQDPVYVFDVKDDTNQATFQCQSRSMPYPYNGIVDPLDVAAQQGRGQLGDDEPEDLKAIDKKTPK*

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