Scaffold Ga0118687_10000618

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0118687_10000618

Scaffold Ga0118687_10000618

Overview

Basic Information
Taxon OID	3300009124 Open in IMG/M
Scaffold ID	Ga0118687_10000618 Open in IMG/M
Source Dataset Name	Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsf
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	14173
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (73.68%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium GW2011_GWF1_45_5	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location
Location Name	Hudson Canyon, US Atlantic Margin
Coordinates	Lat. (^o)	39.54345	Long. (^o)	-72.3998	Alt. (m)		Depth (m)	541.1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F045186	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118687_1000061813	F045186	GAGG	MKNMKSKSSMSSVKGVYSYSKNPMKKPRQVAPMCGPGGNADQAKANKLLQKAYKENDSQRGMSGM*

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