Scaffold Ga0118723_1017805

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0118723_1017805

Scaffold Ga0118723_1017805

Overview

Basic Information
Taxon OID	3300009126 Open in IMG/M
Scaffold ID	Ga0118723_1017805 Open in IMG/M
Source Dataset Name	Combined Assembly of Gp0139357, Gp0139356
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Genomics Facility
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5561
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location Name	Cariaco Basin, Venezuela
Coordinates	Lat. (^o)	10.5	Long. (^o)	-64.66	Alt. (m)		Depth (m)	198
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F078260	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118723_10178054	F078260	AGG	MKNKIYRILRLSLVFAMGNSIFAEAKPLPDFNAGSMNWGTQRYKFTLIKNEEKTELGSVTLRNKLSGDQVLLTDEYLVSIGGKPMSLSMTQVCRKDQFLSPLKVQCEGKGNDEMPTFKATIQDGEAKIERKLPFKISNSMKIPAETVTSAAFMRIVTQLPRVEGATYRYAFALEASEMNLKKDYVAKVIGKETIFCDGEPVKCWKISQNGGGIREQLFWVTEDGILQRVLQDGRKQIDLQTGEQGD*

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