Scaffold Ga0118727_1032341

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0118727_1032341

Scaffold Ga0118727_1032341

Overview

Basic Information
Taxon OID	3300009128 Open in IMG/M
Scaffold ID	Ga0118727_1032341 Open in IMG/M
Source Dataset Name	Combined Assembly of Gp0137084, Gp0137083
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Genomics Facility
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6354
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location Name	Cariaco Basin, Venezuela
Coordinates	Lat. (^o)	10.5	Long. (^o)	-64.66	Alt. (m)		Depth (m)	234
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F064639	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118727_10323415	F064639	AGG	MVGKTAIKDNSLKDSKISSKKLTYNLKNKLLKQKKIDHYFLEKLTFISLEELITLKLLVSTEALKGKMYNFPFLKYASDICKESIIRFAISKANNRREVSLILGAKKAEIIKYIKEYDLMEEYNYDSRAKKSN*

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