NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0118727_1053821

Scaffold Ga0118727_1053821


Overview

Basic Information
Taxon OID3300009128 Open in IMG/M
Scaffold IDGa0118727_1053821 Open in IMG/M
Source Dataset NameCombined Assembly of Gp0137084, Gp0137083
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4014
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)234
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019821Metagenome227N
F027158Metagenome195N

Sequences

Protein IDFamilyRBSSequence
Ga0118727_105382110F027158GGAGGMTNPTQTPISELTLAQVISLTQAGLIGLKDGSPVYTSKADKAAKAGATKARRQGVLSEVTEFFASPIGQSTKFFSIKPTSGMFAACARAINANVEASREDILWSLKQLEKQGLARQVGIKAEIIANDRGVDIKRPKVVDVSEVNNFQRRWVHSIEAAPAEDAPAQDDSAK*
Ga0118727_10538213F019821AGGAGMTISNKTTLQELIDLGLFSAADIEKLNNKITRGADRAAKKALVEGTMSAIKALVESEAHDGNRYWSVKQAAHSLGFMSYIETDRGTILKALTKLTEEGYLTKVGLKKVDGKLTELDKTQVNAFQLRYIVTPVEEADAAVDEEGS*
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