NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0118728_1041691

Scaffold Ga0118728_1041691


Overview

Basic Information
Taxon OID3300009129 Open in IMG/M
Scaffold IDGa0118728_1041691 Open in IMG/M
Source Dataset NameCombined Assembly of Gp0139513, Gp0139514
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2488
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)198
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008755Metagenome / Metatranscriptome328Y
F078824Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0118728_10416913F078824GAGGMLETGLTHNTTVELLHQATLQLVQENPKRFEQYVKFFEFGCMYLQDESDEIPEVENIGR*
Ga0118728_10416915F008755N/AGWKAKDARFFRLGFNKVAKENNFNVMNVGVTPTPSRSKTSKGSMNINVKSKQKNPSPLTTEPTSSIKPPTEQEKKFGALPQTPQLENQQAQATYYSAQAVGQIFETVFNIVFTRLGAEGLTQNERIALGEAWTPIFNEYLTGENSKWIMPAVVTMPIILTRVVQVQKIKKEKELAERYGLDEVPKEPQPKKKSAWENMSHGEKTNKG*
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