NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0118729_1002571

Scaffold Ga0118729_1002571


Overview

Basic Information
Taxon OID3300009130 Open in IMG/M
Scaffold IDGa0118729_1002571 Open in IMG/M
Source Dataset NameCombined Assembly of Gp0139511, Gp0139512
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19508
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (65.22%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)103
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005620Metagenome395Y
F014071Metagenome / Metatranscriptome266Y
F028524Metagenome / Metatranscriptome191Y
F047373Metagenome150Y
F059941Metagenome133Y
F081210Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0118729_100257123F047373GGAGGMITNQKIEAGDVEYSRLSEVLRFTVAANIEAIRMMEDICGRTDMSIEELAHEMAQLLQQAITTNYHRGGHRRKYD*
Ga0118729_100257128F005620AGGAMTQDETFTKQIETFKTFCKNNRLRLKEDGDGLPVARAIGKFKDDQFFCNFKDGTIGVYVTRETQRQFTYLNKKLVKLGCVPIQLGDFEASYDLEWMNIPPVAKLLKIKKGAAKVKDPKWLRENG*
Ga0118729_100257130F014071GGAMSTTRPGRLIDKTFTSFTEASGRLEDTIGWVTKAKDLAHEFEPGCKAEVTLHLLEEVLEKAGRELDRASTELAMEVFGSEGTP*
Ga0118729_100257132F028524AGGMTTTNNDFESTVKEFVNKLTTIENEMTILRQDRSELFGDMKEKLDPRSFRAAIKIHNLQKSTPDQTSLTRILEVLETTE*
Ga0118729_100257144F059941GAGGMKLGTLVQFAAYGAVMDTGYVSKYDDEPGWIWVDCVKMGPQLVREDSKMMEVVSESR*
Ga0118729_100257146F081210GGAGGVRPGDLVKQAPNIFADRKVAGKKMLVLKVMDGGPNRGETVLTLLEGTERVWHYGELELW
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Institute for Fundamental Biomedical Research
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