Scaffold Ga0118729_1008307

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0118729_1008307

Scaffold Ga0118729_1008307

Overview

Basic Information
Taxon OID	3300009130 Open in IMG/M
Scaffold ID	Ga0118729_1008307 Open in IMG/M
Source Dataset Name	Combined Assembly of Gp0139511, Gp0139512
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Genomics Facility
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8550
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (76.47%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location Name	Cariaco Basin, Venezuela
Coordinates	Lat. (^o)	10.5	Long. (^o)	-64.66	Alt. (m)		Depth (m)	103
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F018814	Metagenome	233	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118729_10083077	F018814	GGAGG	MDSTKSHVKIYNISPDEAEDFEFDYDTATSDILTELVPNLDNWGGFGWMELEEYEYNLHDNTMHFGLETKWASPVQWLQHASKGTHYFENKLITMSTIQKDETCVMGTAVMDGEVLQHKTIFEMESEEVSKYYSEEEPGYDLDSLDNQIWDAIGKFVTVCEQFYLEGEKTND*

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