Basic Information | |
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Taxon OID | 3300009131 Open in IMG/M |
Scaffold ID | Ga0115027_10000004 Open in IMG/M |
Source Dataset Name | Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 30948 |
Total Scaffold Genes | 54 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (37.04%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland → Wetland Microbial Communities From Old Woman Creek Reserve In Ohio, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Old Woman Creek National Estuarine Research Reserve, Ohio, USA | |||||||
Coordinates | Lat. (o) | 41.224 | Long. (o) | -82.304 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F013505 | Metagenome / Metatranscriptome | 270 | Y |
F021068 | Metagenome / Metatranscriptome | 220 | Y |
F022611 | Metagenome / Metatranscriptome | 213 | Y |
F034858 | Metagenome | 173 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0115027_1000000417 | F022611 | N/A | MWGLPDRQPFNIGPYKLWPCFSRPEFQWFAAIDGQPHYFRTTNEAKLYVRDLLAMGDEEGLCD* |
Ga0115027_100000042 | F013505 | GAG | MVLYCSFVRNQAMHCTIEGHRDNPYLAKLEADRQAQHSGYGVRSYLCTDGSTKWEAYGWERITEFQLHDTSYGLFDHKWEAEQYFNSCIYGQQ* |
Ga0115027_1000000434 | F034858 | AGGAGG | MILPEGSIRFCISTCKKFAPHTIPVIIPSLLAAGLKPEEILIVNGGQAVRAFTSYKGVPMLLTQQNSFEYTPLIEIVEHSMESPYWFLLHDTCIAGPTFRQLAYEPPVEAPEKVAMKHTPSMSIGLYRHDYLMAHKQRLMAIKNTDSSPDALQRWKQWGVPNEDYMLWKLQDVPCHIYHPDKHGPDEWNYQGHADPYGTGMQRRIEYFPQLELAKAKSNWQGVQPHLCIDI* |
Ga0115027_1000000437 | F021068 | GAGG | MQPSDCTIYAVCIPGEAVRYEARSRIVPIMGGAHALSGDEREALRSQGYVFDDENASLSRLNSRWGELSCISWMILNANEKNIGNAQYRRNWLEPGDQWYDENTLYFPEPALFNCTLEQQFYGGHSTFDAPAITREIADSGSWIFSREEIDAIWNQNSFIGCNMARGSNVQYKQFMSALFVALAPIWHKHEEQFLHIGGYDKRALAFIAERLITGMVLYRDKLFPGMNIATAPIGFIH* |
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