Scaffold Ga0118730_1078627

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0118730_1078627

Scaffold Ga0118730_1078627

Overview

Basic Information
Taxon OID	3300009132 Open in IMG/M
Scaffold ID	Ga0118730_1078627 Open in IMG/M
Source Dataset Name	Combined Assembly of Gp0139359, Gp0139510
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Genomics Facility
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2291
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → Lentisphaeria → Lentisphaerales → Lentisphaeraceae → Lentisphaera → Lentisphaera araneosa → Lentisphaera araneosa HTCC2155	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location Name	Cariaco Basin, Venezuela
Coordinates	Lat. (^o)	10.5	Long. (^o)	-64.66	Alt. (m)		Depth (m)	103
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017636	Metagenome / Metatranscriptome	239	Y
F085651	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0118730_10786272	F017636	N/A	MNNYMSRLEKKAQEKENQEFASKLKGFLLFLPCWIPIILAFFLLAMGMASEASPYIVMGSLLALVCGSLGQMRAKIIQQNQAIQILHEKLDKVSGTAD*
Ga0118730_10786273	F085651	N/A	VIKFYIFNTDHEQEPASLGSGLFSKKWEATYLGEQFVVINNWFSGLKIYHNGNLVGQSNQLVVRNKYEPFTSVTVVGKKDKLLVEIYGYSSLFSFKFHIKINGDFVAGDKF*

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