NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0118730_1111543

Scaffold Ga0118730_1111543


Overview

Basic Information
Taxon OID3300009132 Open in IMG/M
Scaffold IDGa0118730_1111543 Open in IMG/M
Source Dataset NameCombined Assembly of Gp0139359, Gp0139510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1786
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)103
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010943Metagenome297Y

Sequences

Protein IDFamilyRBSSequence
Ga0118730_11115432F010943AGGAMTPSELHDYLLSLKNKNALDPNIAEYKKTIRKELYAFRSAQPMSNRCYRDTCGPEGHPLHLQNVRPFPDQEAIQKIHHTHSTQDVVFYSFMEAPGKPKIGEHEYKRLALSWKSLRKHNKDIEVRFCYNGDNEMWNALCGQYDIKMFPFHESFTGNEPNAWCIHRWYNLANFSKEHLNVLYLDADTYIGGDIQLVFDLYRRDPVYGREELGFRHDPNLGVCGEDPRFYLDLIDASIRAQGGKTEVQKYCLGVILLNHSVHKLFTPEILKGYTDLLERIHKFEVFYSIPNYRIMDEFAFWVLLSRWSLRTSLFGDQDVSQTFLERKHETHFNPLILHYTTKDEEKFADWAPEFFCLSRTEEEREESELAAGGIYNVMPLMRE
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