NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0066709_100003018

Scaffold Ga0066709_100003018


Overview

Basic Information
Taxon OID3300009137 Open in IMG/M
Scaffold IDGa0066709_100003018 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12681
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (56.25%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001899Metagenome620Y
F042270Metagenome158Y
F072171Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0066709_10000301812F072171GGCGGVADTSSPGLARSPGYERPAQNASGEDRKFADEKAFASLLTDTVVESMADILGENVLSLLISKGMLDHAENPGELERQLALTFGNGSVALERMIVKALYRKLGIRLDSSFGFDYAKALDVARNVFGETRRKWKNVLD*
Ga0066709_1000030182F001899AGGGGGVTVTCGFRFEVRREDEVVELRADHHTARVCESCLVLLTVHRRVHRMKVEKVIAAMAEPVPLVAEV*
Ga0066709_1000030188F042270GAGGMTKNKTREGPLPPPDRGVNDARPGLPTPTVRKDVTWVQPEPITSDVTRPQQLSPDTKWAEPSVVKSKPAKGSPGLSTTRDQKEE*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.