NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066709_100371000

Scaffold Ga0066709_100371000


Overview

Basic Information
Taxon OID3300009137 Open in IMG/M
Scaffold IDGa0066709_100371000 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1974
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005811Metagenome / Metatranscriptome389N
F042817Metagenome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0066709_1003710001F042817N/AMAPVKRIVVDPAQGLAAAVAKLRRPLGATVARRHCLVERPETTSLDLFASLGLQALMSTMLMGWTPESGRLMRWVWMSARSSVRIRMWRTSMMLWIGVRVTLGFRLGFHVDSSRKIRGRS
Ga0066709_1003710002F005811GGAGGMIRPENRRQWVPKTAELTLAAGLAATYIITTFIPLTPFIGGPGFITLEIVMLPIIAALLRPIPALATVFVGSLGMALGQPSFYQVFGLPGLLIPVVAVGAGSVAFHYRLGLIVPWAYVLGGAVYYIALSKGGTLFWLVPYLLVIVSLPAAFRLKNNPRIGLLTFYIAMTEQVTLNILSISILSLTGPVWAVVTPLMYVERTIATFGGAAGIVALKSGLGGRLDLMDHSPREVRQ*
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