Scaffold Ga0066709_100801279

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0066709_100801279

Scaffold Ga0066709_100801279

Overview

Basic Information
Taxon OID	3300009137 Open in IMG/M
Scaffold ID	Ga0066709_100801279 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1365
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005023	Metagenome / Metatranscriptome	414	Y
F030218	Metagenome / Metatranscriptome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066709_1008012791	F030218	N/A	VAQWLGEPMWTPKSGTGLTIYGDYGRPNTDAGKGNAFGGRVALGLSTLTLTAGVASWKPETFNSRVTSYGGTASFRLIGGSLIPVGVHLQVGAAHSGQVTSGTQTLSARTTVNGAVAFSVPVPTPGMSIEPYFSPGIRYHKLSTVPTGTPDHETNFGWVIGGNLGFGLVGIHLAYDSEKFDDGTTHGVFGVGGNVGLRLPMGL*
Ga0066709_1008012792	F005023	GAGG	MKRALLTLGLTVSLATPATGQWLGEPAWNHPNAGTGFTIYGDYTQPSSEAGGGNAVGGRITLGAGTFTLTGGVSSWKSNLASERVTTFGGTAAFRLIGGSLIPVAVNLQLGGGHSLEITSSTTTVPVQTTLLGAVGLSVPLPTPVVKVEPYVSPGIRYHHYANGAPNQTNFGWVIGGNVGLGPIGIHVAYDSEKFDDGKRHGVLGIGANIELRPSGP*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.