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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009139 Open in IMG/M |
| Scaffold ID | Ga0114949_11487199 Open in IMG/M |
| Source Dataset Name | Deep subsurface microbial communities from Kermadec Trench to uncover new lineages of life (NeLLi) - N074 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 541 |
| Total Scaffold Genes | 1 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 1 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Kermadec Trench | |||||||
| Coordinates | Lat. (o) | -34.3456 | Long. (o) | -178.1771 | Alt. (m) | Depth (m) | 8081 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F016597 | Metagenome / Metatranscriptome | 246 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114949_114871991 | F016597 | N/A | SSTGDSSYGLFFTPREMELFNDYNTELLGIIAQTGITYYRIEPDSSDPNSIYGESEVKVTRDPVQVYCWVMLDEPDIETNAFTVDVRRRIELYMHKDGLTERDIVPRMGDFVGYDNQYFEILRVGVPNFVYSYPQTKLGVIAKCLSVREGVFDPNRDFVNKEYVGDTETPY* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |