NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099792_10279392

Scaffold Ga0099792_10279392


Overview

Basic Information
Taxon OID3300009143 Open in IMG/M
Scaffold IDGa0099792_10279392 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)983
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California, Eel River Critical Zone Observatory
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005262Metagenome / Metatranscriptome406Y
F005616Metagenome / Metatranscriptome395N
F071477Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0099792_102793921F071477GAGGMPAAFQWARLKADVKCALRKGAWYRILKLTSTEVVLDVRGKPLSVPRGQLQLS
Ga0099792_102793922F005616AGGMIPYGGEGLRGEPQDFRIPRTGDRDLAFRGWLLSHAEERSGSPGLTRGVDIDIYLTIRLRLVAHLCRWSLRDGEGLREEHRVAAHDSPARLIEWLKHENAGSLDAPSKRAWVRACQAWPGLKSEAVERVD*
Ga0099792_102793923F005262N/AAGQAAPGHVYWVGFYQALPGKAAAYNKALTDIADPVLDELVRRKQMISHVQLAQYTGAGENSNLVILEFPNWAALDTYEAKLEEASQVVLHKPWSEATAGFAELRRLVRVEIYTPAGRR*
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