NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0058702_10111253

Scaffold Ga0058702_10111253


Overview

Basic Information
Taxon OID3300009144 Open in IMG/M
Scaffold IDGa0058702_10111253 Open in IMG/M
Source Dataset NameAgave microbial communities from Guanajuato, Mexico - Or.Sf.e
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1045
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Microcoleus → environmental samples → uncultured Microcoleus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameGuanajuato, Mexico
CoordinatesLat. (o)21.7658Long. (o)-100.163Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F078146Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0058702_101112532F078146N/AGYQIHISWIVLPEGTRDKQAQVTQAYYVRVFEPKLNIHQNTFAAVQVEQLKKGIENLEQCKYDFIKKQVESWEQSGEDKDTIIKKIWEAGRDRLMVNI*
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